The military rulers, who seized power in successive coups in 2020 and 2021, had promised to hold elections in February but postponed the vote indefinitely for technical reasons.
Last week, Maiga said there had been no debate on the elections' postponement within the government and that he found out about the junta's decision from the media.
"It's all happening in total secrecy, without the prime minister's knowledge," Maiga told reporters on Saturday.
His comments sparked tensions with the junta, forcing it to postpone a ministerial council meeting planned for Wednesday, a source close to Maiga told Reuters.
Maiga had fervently defended Mali's junta as West African neighbours and international allies criticised its military cooperation with Russian mercenaries and repeated election delays.
Under the law, Maiga's successor would have to form a new government in consultation with interim President Assimi Goïta.
Before being named prime minister in 2021, Maiga served as Mali's commerce minister under former President Amadou Toumani Toure and as digital economy minister under former President Ibrahim Boubacar Keita.
Maiga was also the leader of the M5-RFP opposition coalition that spearheaded protests against Keita before his overthrow.
(Reporting by Fadimata Kontao; Additional reporting by Tiemoko Diallo; Writing by Anait Miridzhanian and Portia Crowe; Editing by Alexander Winning and Richard Chang)

Mali opposition leader Choguel Maiga named transitional prime minister during the swearing in ceremony of Colonel Assimi Goita the new interim president in Bamako, Mali, 07 June 2021. Assimi Goita was sworn in during a ceremony in the capital and set February 2022 for elections after removing the former transitional president two weeks ago. Assimi Goita named Choguel Maiga as Mali's transitional prime minister. EPA-EFE/HADAMA DIAKITE
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